Information for 1-GGAGGCAGAG (Motif 3)


Reverse Opposite:

p-value:1e-25
log p-value:-5.782e+01
Information Content per bp:1.643
Number of Target Sequences with motif329.0
Percentage of Target Sequences with motif18.79%
Number of Background Sequences with motif130.9
Percentage of Background Sequences with motif7.21%
Average Position of motif in Targets37.5 +/- 18.5bp
Average Position of motif in Background34.5 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.41
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SeqBias: GA-repeat

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GGAGGCAGAG-
-GAGAGAGAGA

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GGAGGCAGAG-
-GAGSCCGAGC

ADR1/Literature(Harbison)/Yeast

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GGAGGCAGAG
NGGAGG-----

ADR1(MacIsaac)/Yeast

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GGAGGCAGAG
NGGAGG-----

CRZ1(MacIsaac)/Yeast

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GGAGGCAGAG
-GAGGCTG--

Trl/dmmpmm(Down)/fly

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GGAGGCAGAG---
-GAGAGAGAGAGC

ZNF263/MA0528.1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GGAGGCAGAG--------
GGAGGAGGAGGGGGAGGAGGA

SP1/MA0079.3/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGAGGCAGAG-
GGGGGCGGGGC

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGAGGCAGAG
RGAGAGAGAG

E2F6/MA0471.1/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GGAGGCAGAG
GGGCGGGAAGG