Information for 2-SCTGGRATBMAA (Motif 5)


Reverse Opposite:

p-value:1e-22
log p-value:-5.108e+01
Information Content per bp:1.607
Number of Target Sequences with motif213.0
Percentage of Target Sequences with motif12.16%
Number of Background Sequences with motif64.1
Percentage of Background Sequences with motif3.53%
Average Position of motif in Targets37.7 +/- 18.1bp
Average Position of motif in Background32.0 +/- 18.0bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:SCTGGRATBMAA
GCTGTG------

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--SCTGGRATBMAA------
NNCCTGNAAAAAAAAAAAAA

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--SCTGGRATBMAA------
NNCCTGNAAAAAAAAAAAAA

SWI5/Literature(Harbison)/Yeast

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-SCTGGRATBMAA
GGCTGA-------

POL002.1_INR/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---SCTGGRATBMAA
NNNANTGA-------

PB0169.1_Sox15_2/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---SCTGGRATBMAA
TTGAATGAAATTCGA

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:SCTGGRATBMAA
NCTGGAATGC--

RAV1(2)(AP2/EREBP)/Arabidopsis thaliana/AthaMap

Match Rank:8
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----SCTGGRATBMAA
ATCACCTGAGGC----

RAV1(var.2)/MA0583.1/Jaspar

Match Rank:9
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----SCTGGRATBMAA
ATCACCTGAGGC----

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:SCTGGRATBMAA
CCWGGAATGY--