Information for 5-GGCAAGAM (Motif 6)


Reverse Opposite:

p-value:1e-19
log p-value:-4.555e+01
Information Content per bp:1.725
Number of Target Sequences with motif259.0
Percentage of Target Sequences with motif14.79%
Number of Background Sequences with motif101.0
Percentage of Background Sequences with motif5.57%
Average Position of motif in Targets37.4 +/- 20.0bp
Average Position of motif in Background40.2 +/- 22.6bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGAM-
AAGGCAAGTGT

RIM101/MA0368.1/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GGCAAGAM
CGCCAAG--

RIM101/Literature(Harbison)/Yeast

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGCAAGAM
TGCCAAG--

RIM101(MacIsaac)/Yeast

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGCAAGAM
TGCCAAG--

GCR2/MA0305.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GGCAAGAM
NGGAAGC-

br-Z4/dmmpmm(Bergman)/fly

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GGCAAGAM
AGAAACA-

ttk/dmmpmm(SeSiMCMC)/fly

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GGCAAGAM-
-GCAGGACC

ttk/dmmpmm(Papatsenko)/fly

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GGCAAGAM-
GCCAGGACC

NAC92/MA1044.1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GGCAAGAM---
TAACACGCCACA

GCR2(MacIsaac)/Yeast

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGCAAGAM
NGGAAGC-