Information for 1-ACTTTGGAAG (Motif 1)


Reverse Opposite:

p-value:1e-10
log p-value:-2.491e+01
Information Content per bp:1.694
Number of Target Sequences with motif139.0
Percentage of Target Sequences with motif5.68%
Number of Background Sequences with motif54.3
Percentage of Background Sequences with motif2.10%
Average Position of motif in Targets34.5 +/- 20.8bp
Average Position of motif in Background35.5 +/- 19.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GCR1/MA0304.1/Jaspar

Match Rank:1
Score:0.71
Offset:4
Orientation:forward strand
Alignment:ACTTTGGAAG--
----TGGAAGCC

GCR2/MA0305.1/Jaspar

Match Rank:2
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:ACTTTGGAAG-
----NGGAAGC

GCR2(MacIsaac)/Yeast

Match Rank:3
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:ACTTTGGAAG-
----NGGAAGC

HSF1/MA0319.1/Jaspar

Match Rank:4
Score:0.67
Offset:3
Orientation:forward strand
Alignment:ACTTTGGAAG-
---ATGGAACA

pan/dmmpmm(Papatsenko)/fly

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:ACTTTGGAAG
-CTTTGAT--

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:ACTTTGGAAG--
--TTTGAAACCG

GCR1(MacIsaac)/Yeast

Match Rank:7
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:ACTTTGGAAG---
----TGGAAGCCC

RME1(MacIsaac)/Yeast

Match Rank:8
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--ACTTTGGAAG
TTCCTTTGGA--

NFATC2/MA0152.1/Jaspar

Match Rank:9
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:ACTTTGGAAG-
----TGGAAAA

slbo/dmmpmm(Pollard)/fly

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:ACTTTGGAAG
--TTTGCAAT