Information for 3-ATCGCAGC (Motif 11)


Reverse Opposite:

p-value:1e-7
log p-value:-1.740e+01
Information Content per bp:1.604
Number of Target Sequences with motif162.0
Percentage of Target Sequences with motif6.62%
Number of Background Sequences with motif85.6
Percentage of Background Sequences with motif3.31%
Average Position of motif in Targets36.4 +/- 21.1bp
Average Position of motif in Background35.5 +/- 21.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.73
Offset:4
Orientation:forward strand
Alignment:ATCGCAGC-
----CAGCC

SOK2/SOK2_BUT14/4-SUT1(Harbison)/Yeast

Match Rank:2
Score:0.72
Offset:2
Orientation:forward strand
Alignment:ATCGCAGC--
--TGCAGGNA

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:ATCGCAGC
--CACAGN

CHA4(MacIsaac)/Yeast

Match Rank:4
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---ATCGCAGC
CTCATCGCA--

NHLH1/MA0048.2/Jaspar

Match Rank:5
Score:0.70
Offset:2
Orientation:forward strand
Alignment:ATCGCAGC----
--CGCAGCTGCG

SWI5/Literature(Harbison)/Yeast

Match Rank:6
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:ATCGCAGC-
---CCAGCA

Gfi1b/MA0483.1/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--ATCGCAGC-
AAATCACAGCA

ACE2/MA0267.1/Jaspar

Match Rank:8
Score:0.67
Offset:2
Orientation:forward strand
Alignment:ATCGCAGC-
--ACCAGCA

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-ATCGCAGC------
CCACACAGCAGGAGA

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-ATCGCAGC------
GAGCACAGCAGGACA