Information for 2-GCCAGGCATG (Motif 2)


Reverse Opposite:

p-value:1e-10
log p-value:-2.358e+01
Information Content per bp:1.840
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif1.88%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets33.0 +/- 19.4bp
Average Position of motif in Background37.5 +/- 16.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---GCCAGGCATG--
SCAGYCADGCATGAC

PL0008.1_hlh-29/Jaspar

Match Rank:2
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---GCCAGGCATG----
TNNGCCACGCGTGNNNN

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GCCAGGCATG-
-CCWGGAATGY

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GCCAGGCATG---
GCAGCCAAGCGTGACN

pros/dmmpmm(Bergman)/fly

Match Rank:5
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GCCAGGCATG
---AGNCATG

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GCCAGGCATG-
ATGCCCGGGCATGT

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCCAGGCATG
-CNAGGCCT-

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GCCAGGCATG---
--AAGGCAAGTGT

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:9
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCCAGGCATG-
-CCWGGAATGY

ZEB1/MA0103.2/Jaspar

Match Rank:10
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GCCAGGCATG-
--CAGGTGAGG