Information for 6-CGCCCAAG (Motif 20)


Reverse Opposite:

p-value:1e-5
log p-value:-1.326e+01
Information Content per bp:1.816
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif6.0
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets37.0 +/- 21.0bp
Average Position of motif in Background13.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

EGR2/MA0472.2/Jaspar

Match Rank:1
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CGCCCAAG--
ACGCCCACGCA

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:2
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CGCCCAAG--
YCCGCCCACGCN

EGR3/MA0732.1/Jaspar

Match Rank:3
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---CGCCCAAG----
CTACGCCCACGCACT

EGR4/MA0733.1/Jaspar

Match Rank:4
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CGCCCAAG-----
TTACGCCCACGCATTT

PB0143.1_Klf7_2/Jaspar

Match Rank:5
Score:0.70
Offset:-7
Orientation:forward strand
Alignment:-------CGCCCAAG--
AAGCATACGCCCAACTT

RIM101/MA0368.1/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CGCCCAAG
-CGCCAAG

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CGCCCAAG--
CRCCCACGCA

hkb/dmmpmm(Papatsenko)/fly

Match Rank:8
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CGCCCAAG
CAACGCCCA--

HAP2/MA0313.1/Jaspar

Match Rank:9
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CGCCCAAG
--ACCAA-

RIM101/Literature(Harbison)/Yeast

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CGCCCAAG
-TGCCAAG