Information for 7-GAAGGAAC (Motif 21)


Reverse Opposite:

p-value:1e-5
log p-value:-1.167e+01
Information Content per bp:1.786
Number of Target Sequences with motif133.0
Percentage of Target Sequences with motif5.44%
Number of Background Sequences with motif77.2
Percentage of Background Sequences with motif2.99%
Average Position of motif in Targets33.9 +/- 19.2bp
Average Position of motif in Background35.6 +/- 20.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ttk/dmmpmm(SeSiMCMC)/fly

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GAAGGAAC
GCAGGACC

ttk/dmmpmm(Papatsenko)/fly

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GAAGGAAC
GCCAGGACC

HSF1/MA0319.1/Jaspar

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GAAGGAAC-
-ATGGAACA

AT/dmmpmm(Papatsenko)/fly

Match Rank:4
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GAAGGAAC
ATGAACGAAT

Eip74EF/dmmpmm(Bigfoot)/fly

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GAAGGAAC-
-CAGGAAGT

Eip74EF/dmmpmm(SeSiMCMC)/fly

Match Rank:6
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GAAGGAAC---
--AGGAAGTAT

ttk/dmmpmm(Bigfoot)/fly

Match Rank:7
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GAAGGAAC
-CAGGACC

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:8
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GAAGGAAC---
NDCAGGAARTNN

RME1(MacIsaac)/Yeast

Match Rank:9
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GAAGGAAC
TCCAAAGGAA-

lin-14/MA0261.1/Jaspar

Match Rank:10
Score:0.66
Offset:4
Orientation:forward strand
Alignment:GAAGGAAC--
----GAACAC