Information for 4-AGGGATATCA (Motif 4)


Reverse Opposite:

p-value:1e-9
log p-value:-2.151e+01
Information Content per bp:1.431
Number of Target Sequences with motif59.0
Percentage of Target Sequences with motif2.41%
Number of Background Sequences with motif11.7
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets35.7 +/- 19.0bp
Average Position of motif in Background33.7 +/- 16.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:AGGGATATCA-
AAGGATATNTN

PB0126.1_Gata5_2/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---AGGGATATCA----
GACAGAGATATCAGTGT

MOT3/Literature(Harbison)/Yeast

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGGGATATCA
NAGGCA-----

MOT3(MacIsaac)/Yeast

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGGGATATCA
NAGGCA-----

MOT3/MA0340.1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGGGATATCA
AAGGCA-----

Optix/dmmpmm(Noyes_hd)/fly

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGGGATATCA
AAGTGATAAA-

PB0059.1_Six6_1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AGGGATATCA-----
AATAGGGTATCATATAT

TaMYB80(MYB)/Triticum aestivum/AthaMap

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGGGATATCA-
GGGAATATCCC

dl-B/dmmpmm(Bergman)/fly

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AGGGATATCA-
GGGGAATTCCC

KAN1/MA1027.1/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGGGATATCA
--GAATATNT