Information for 5-TATGCCTGTA (Motif 5)


Reverse Opposite:

p-value:1e-9
log p-value:-2.100e+01
Information Content per bp:1.796
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif1.72%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets28.5 +/- 16.5bp
Average Position of motif in Background39.5 +/- 9.3bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MOT3/Literature(Harbison)/Yeast

Match Rank:1
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TATGCCTGTA
--TACCTN--

MOT3(MacIsaac)/Yeast

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TATGCCTGTA
--TACCTN--

MOT3/MA0340.1/Jaspar

Match Rank:3
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TATGCCTGTA
--TACCTN--

AtLEC2(ABI3/VP1)/Arabidopsis thaliana/AthaMap

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TATGCCTGTA
TTTGCATGGA

SOK2(MacIsaac)/Yeast

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TATGCCTGTA
-TTGCCTGC-

MATALPHA2/MA0328.2/Jaspar

Match Rank:6
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TATGCCTGTA--
----CGTGTAAT

YAP5/MA0417.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TATGCCTGTA
-ATGCTT---

YAP5(MacIsaac)/Yeast

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TATGCCTGTA
-ATGCTT---

unc-86/MA0926.1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TATGCCTGTA
ATATGCAT---

HMRA2/MA0318.1/Jaspar

Match Rank:10
Score:0.63
Offset:4
Orientation:forward strand
Alignment:TATGCCTGTA--
----CATGTAAT