Information for 1-CCCAGCWA (Motif 1)


Reverse Opposite:

p-value:1e-39
log p-value:-9.101e+01
Information Content per bp:1.836
Number of Target Sequences with motif346.0
Percentage of Target Sequences with motif22.51%
Number of Background Sequences with motif91.0
Percentage of Background Sequences with motif6.10%
Average Position of motif in Targets38.9 +/- 19.2bp
Average Position of motif in Background37.4 +/- 22.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ACE2/MA0267.1/Jaspar

Match Rank:1
Score:0.84
Offset:0
Orientation:forward strand
Alignment:CCCAGCWA
ACCAGCA-

SWI5/MA0402.1/Jaspar

Match Rank:2
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGCWA
AACCAGCA-

SWI5(MacIsaac)/Yeast

Match Rank:3
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGCWA
AACCAGCA-

SWI5/Literature(Harbison)/Yeast

Match Rank:4
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:CCCAGCWA
-CCAGCA-

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--CCCAGCWA
TGCCCAGNHW

ACE2/ACE2_YPD/2-SWI5(Harbison)/Yeast

Match Rank:6
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CCCAGCWA
ACCAGCA-

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CCCAGCWA
--CAGCC-

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CCCAGCWA
CACAGN--

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CCCAGCWA----
CCACACAGCAGGAGA

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CCCAGCWA----
CCACACAGCAGGAGA