Information for 8-GCCGAGAT (Motif 12)


Reverse Opposite:

p-value:1e-15
log p-value:-3.561e+01
Information Content per bp:1.654
Number of Target Sequences with motif157.0
Percentage of Target Sequences with motif10.21%
Number of Background Sequences with motif45.9
Percentage of Background Sequences with motif3.08%
Average Position of motif in Targets41.6 +/- 21.4bp
Average Position of motif in Background38.2 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0140.1_Irf6_2/Jaspar

Match Rank:1
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---GCCGAGAT----
NNNACCGAGAGTNNN

DREB1E/MA0978.1/Jaspar

Match Rank:2
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GCCGAGAT
GCCGACAT

PB0138.1_Irf4_2/Jaspar

Match Rank:3
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---GCCGAGAT----
GNNACCGAGAATNNN

DREB1G/MA1032.1/Jaspar

Match Rank:4
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GCCGAGAT
ATGCCGACAT

DRE1C/MA0985.1/Jaspar

Match Rank:5
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GCCGAGAT
ACCGACAT

PB0139.1_Irf5_2/Jaspar

Match Rank:6
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---GCCGAGAT----
TTGACCGAGAATTCC

PDR8/MA0354.1/Jaspar

Match Rank:7
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GCCGAGAT
ACGGAGAT

ARO80/MA0273.1/Jaspar

Match Rank:8
Score:0.69
Offset:-8
Orientation:reverse strand
Alignment:--------GCCGAGAT-----
NNNNANTTNCCGAGANNTNNC

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GCCGAGAT--
GCAGTGATTT

IME1(MacIsaac)/Yeast

Match Rank:10
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GCCGAGAT
CCGCCGAG--