Information for 19-CCCGGCTGAT (Motif 20)


Reverse Opposite:

p-value:1e-8
log p-value:-2.034e+01
Information Content per bp:1.678
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif2.21%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets36.7 +/- 20.3bp
Average Position of motif in Background24.0 +/- 16.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SWI5/Literature(Harbison)/Yeast

Match Rank:1
Score:0.70
Offset:3
Orientation:forward strand
Alignment:CCCGGCTGAT
---GGCTGA-

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CCCGGCTGAT-
-CCTGCTGAGH

NHP10/MA0344.1/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CCCGGCTGAT
TCCCCGGC----

YDR026C(MacIsaac)/Yeast

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCCGGCTGAT
ACCCGG-----

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCCGGCTGAT
CCCCCTGCTGTG

PUT3/MA0358.1/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCCGGCTGAT
TTCCCGGG----

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CCCGGCTGAT
---NGCTN--

YML081W(MacIsaac)/Yeast

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCCGGCTGAT
CCAGTCTGAA

YLL054C/MA0429.1/Jaspar

Match Rank:9
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CCCGGCTGAT
--CGGCCGA-

PL0001.1_hlh-11/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCCGGCTGAT----
NGATCAGCTGATCNNN