Information for 15-CCGCGCSC (Motif 25)


Reverse Opposite:

p-value:1e-6
log p-value:-1.435e+01
Information Content per bp:1.861
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif1.82%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets25.7 +/- 17.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RSC30/MA0375.1/Jaspar

Match Rank:1
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-CCGCGCSC
CGCGCGCG-

SUT1?/SacCer-Promoters/Homer

Match Rank:2
Score:0.79
Offset:0
Orientation:forward strand
Alignment:CCGCGCSC
CCCCGCGC

RSC3/MA0374.1/Jaspar

Match Rank:3
Score:0.76
Offset:1
Orientation:forward strand
Alignment:CCGCGCSC
-CGCGCGG

SeqBias: CG-repeat

Match Rank:4
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CCGCGCSC---
-CGCGCGCGCG

DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer

Match Rank:5
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CCGCGCSC--
--GCGCGCTA

PB0008.1_E2F2_1/Jaspar

Match Rank:6
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CCGCGCSC------
NTCGCGCGCCTTNNN

PB0039.1_Klf7_1/Jaspar

Match Rank:7
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CCGCGCSC----
TCGACCCCGCCCCTAT

SKN7(MacIsaac)/Yeast

Match Rank:8
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CCGCGCSC
TCCGGGCC-

PB0009.1_E2F3_1/Jaspar

Match Rank:9
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CCGCGCSC------
ANCGCGCGCCCTTNN

SKN7/SKN7_H2O2Lo/[](Harbison)/Yeast

Match Rank:10
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CCGCGCSC
GCCNGGGCC