Information for 6-AGGAGAATYRCT (Motif 3)


Reverse Opposite:

p-value:1e-23
log p-value:-5.327e+01
Information Content per bp:1.606
Number of Target Sequences with motif135.0
Percentage of Target Sequences with motif8.78%
Number of Background Sequences with motif18.3
Percentage of Background Sequences with motif1.23%
Average Position of motif in Targets35.1 +/- 16.0bp
Average Position of motif in Background37.2 +/- 20.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ttk/MA0460.1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGGAGAATYRCT
AAGGATAAT----

ttk/dmmpmm(Noyes)/fly

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AGGAGAATYRCT
CAAGGATAATCNAA

PEND/MA0127.1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AGGAGAATYRCT
AATAAGAAGT---

SFL1/MA0377.1/Jaspar

Match Rank:4
Score:0.59
Offset:-8
Orientation:forward strand
Alignment:--------AGGAGAATYRCT-
TAGAGAATAGAAGAAATAAAA

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGGAGAATYRCT
GGGAGGACNG--

NFATC2/MA0152.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGGAGAATYRCT
TGGAAAA-----

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGGAGAATYRCT
-RAACAATGGN-

TEC1/TEC1_YPD/[](Harbison)/Yeast

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AGGAGAATYRCT
--AGGAATG---

PB0062.1_Sox12_1/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AGGAGAATYRCT
NTTNAGAACAATTA--

PB0063.1_Sox13_1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AGGAGAATYRCT-
TTAAGAACAATAAATT