Information for 3-AGCCACCAYG (Motif 4)


Reverse Opposite:

p-value:1e-22
log p-value:-5.258e+01
Information Content per bp:1.700
Number of Target Sequences with motif86.0
Percentage of Target Sequences with motif5.60%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets36.3 +/- 19.5bp
Average Position of motif in Background45.0 +/- 4.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RPN4/MA0373.1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:AGCCACCAYG
CGCCACC---

schlank/MA0193.1/Jaspar

Match Rank:2
Score:0.71
Offset:2
Orientation:forward strand
Alignment:AGCCACCAYG
--CTACCAA-

RPN4/RPN4_H2O2Lo/[](Harbison)/Yeast

Match Rank:3
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AGCCACCAYG
TTTGCCACC---

MET32/MA0334.1/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AGCCACCAYG
CGCCACA---

SWI5(MacIsaac)/Yeast

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AGCCACCAYG
AACCAGCA--

MET31/MA0333.1/Jaspar

Match Rank:6
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AGCCACCAYG
CGCCACANN-

Run/dmmpmm(Papatsenko)/fly

Match Rank:7
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:AGCCACCAYG
---CACCGCC

ZBTB7C/MA0695.1/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGCCACCAYG
GCGACCACCGAA

ZNF354C/MA0130.1/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGCCACCAYG
ATCCAC----

SWI5/MA0402.1/Jaspar

Match Rank:10
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGCCACCAYG
AACCAGCA--