Information for 7-GAGATGGAGTCT (Motif 6)


Reverse Opposite:

p-value:1e-21
log p-value:-5.020e+01
Information Content per bp:1.624
Number of Target Sequences with motif179.0
Percentage of Target Sequences with motif11.65%
Number of Background Sequences with motif41.8
Percentage of Background Sequences with motif2.81%
Average Position of motif in Targets38.9 +/- 18.7bp
Average Position of motif in Background41.8 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

eor-1/MA0543.1/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GAGATGGAGTCT
AGAGAGACGCAGAGA

SeqBias: GA-repeat

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GAGATGGAGTCT
GAGAGAGAGA--

PDR8/MA0354.1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GAGATGGAGTCT
ACGGAGAT-------

GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:4
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GAGATGGAGTCT---
NNNNNBAGATAWYATCTVHN

Unknown4/Arabidopsis-Promoters/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GAGATGGAGTCT
RAAGAMGAMG---

SPT23/MA0388.1/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAGATGGAGTCT
GAAATCAA----

YNR063W/MA0432.1/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GAGATGGAGTCT
TCGGAGAT-------

Tal1

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GAGATGGAGTCT
CAGATG------

YY1(Zf)/Promoter/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GAGATGGAGTCT
CAAGATGGCGGC-

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GAGATGGAGTCT
RGAGAGAG-----