Information for 5-GTCTCCCAAG (Motif 8)


Reverse Opposite:

p-value:1e-21
log p-value:-4.943e+01
Information Content per bp:1.736
Number of Target Sequences with motif102.0
Percentage of Target Sequences with motif6.64%
Number of Background Sequences with motif9.0
Percentage of Background Sequences with motif0.60%
Average Position of motif in Targets37.9 +/- 18.3bp
Average Position of motif in Background32.3 +/- 15.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RIM101/Literature(Harbison)/Yeast

Match Rank:1
Score:0.73
Offset:3
Orientation:forward strand
Alignment:GTCTCCCAAG
---TGCCAAG

RIM101(MacIsaac)/Yeast

Match Rank:2
Score:0.73
Offset:3
Orientation:forward strand
Alignment:GTCTCCCAAG
---TGCCAAG

ARF1(ABI3/VP1)/Arabidopsis thaliana/AthaMap

Match Rank:3
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GTCTCCCAAG
CTTGTCTCCCA--

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GTCTCCCAAG
HTTTCCCASG

RIM101/MA0368.1/Jaspar

Match Rank:5
Score:0.68
Offset:3
Orientation:forward strand
Alignment:GTCTCCCAAG
---CGCCAAG

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GTCTCCCAAG
--TTGCCAAG

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GTCTCCCAAG
---TGCCAA-

GCR1/MA0304.1/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GTCTCCCAAG
GGCTTCCA--

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GTCTCCCAAG-
-GGTGCCAAGT

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GTCTCCCAAG
-CGTGCCAAG