Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1538)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 1490)	% of Background Sequences with Motif
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-5	-1.377e+01	0.0004	133.0	8.65%	66.0	4.43%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-5	-1.324e+01	0.0004	256.0	16.66%	161.3	10.82%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-5	-1.307e+01	0.0004	118.0	7.68%	56.7	3.80%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-5	-1.200e+01	0.0006	116.0	7.55%	57.1	3.83%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-4	-1.149e+01	0.0008	288.0	18.74%	194.4	13.05%
SeqBias: TA-repeat	TATATATATA	1e-4	-1.062e+01	0.0016	430.0	27.98%	321.5	21.58%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-4	-1.059e+01	0.0016	19.0	1.24%	1.5	0.10%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e-4	-9.323e+00	0.0043	17.0	1.11%	1.9	0.13%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-3	-8.189e+00	0.0119	39.0	2.54%	13.9	0.93%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-3	-7.963e+00	0.0135	24.0	1.56%	5.5	0.37%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-3	-7.837e+00	0.0139	96.0	6.25%	53.6	3.59%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-3	-7.837e+00	0.0139	117.0	7.61%	69.0	4.63%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-3	-7.448e+00	0.0173	14.0	0.91%	1.6	0.11%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-3	-7.434e+00	0.0173	70.0	4.55%	35.3	2.37%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-3	-6.973e+00	0.0242	163.0	10.61%	109.7	7.36%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-3	-6.964e+00	0.0242	31.0	2.02%	10.8	0.72%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-3	-6.954e+00	0.0242	20.0	1.30%	4.7	0.32%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-2	-6.568e+00	0.0302	15.0	0.98%	2.7	0.18%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-2	-6.443e+00	0.0324	97.0	6.31%	59.0	3.96%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-2	-6.344e+00	0.0340	73.0	4.75%	40.2	2.70%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-2	-6.177e+00	0.0383	46.0	2.99%	21.8	1.46%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e-2	-6.071e+00	0.0406	123.0	8.00%	80.6	5.41%
SeqBias: G/A bias	RRRRRRRRRR	1e-2	-6.051e+00	0.0406	1511.0	98.31%	1440.2	96.65%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-2	-5.980e+00	0.0408	41.0	2.67%	19.0	1.27%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-2	-5.873e+00	0.0436	83.0	5.40%	49.9	3.35%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-2	-5.805e+00	0.0448	36.0	2.34%	15.4	1.03%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-2	-5.684e+00	0.0488	319.0	20.75%	251.5	16.88%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-2	-5.299e+00	0.0691	22.0	1.43%	7.8	0.52%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-2	-5.287e+00	0.0691	36.0	2.34%	16.6	1.11%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-2	-5.221e+00	0.0697	43.0	2.80%	22.0	1.48%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-2	-5.055e+00	0.0796	18.0	1.17%	5.7	0.38%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-2	-5.046e+00	0.0796	82.0	5.34%	52.0	3.49%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-2	-5.038e+00	0.0796	92.0	5.99%	59.4	3.99%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-2	-4.945e+00	0.0810	61.0	3.97%	35.6	2.39%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-2	-4.876e+00	0.0844	21.0	1.37%	7.7	0.52%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-1	-4.564e+00	0.1121	86.0	5.60%	56.9	3.82%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-4.501e+00	0.1161	54.0	3.51%	31.1	2.09%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-4.491e+00	0.1161	46.0	2.99%	25.3	1.70%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-4.470e+00	0.1161	123.0	8.00%	87.0	5.84%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-1	-4.417e+00	0.1168	9.0	0.59%	1.6	0.11%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-4.358e+00	0.1180	11.0	0.72%	2.5	0.17%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-4.358e+00	0.1180	11.0	0.72%	2.7	0.18%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-4.307e+00	0.1212	18.0	1.17%	6.2	0.41%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-4.307e+00	0.1212	33.0	2.15%	16.0	1.08%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-4.223e+00	0.1260	27.0	1.76%	12.2	0.82%
SeqBias: GA-repeat	GAGAGAGAGA	1e-1	-4.188e+00	0.1277	527.0	34.29%	455.5	30.57%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-4.159e+00	0.1286	16.0	1.04%	5.0	0.34%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-4.071e+00	0.1347	6.0	0.39%	0.5	0.03%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-4.071e+00	0.1347	6.0	0.39%	0.5	0.04%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-4.004e+00	0.1412	52.0	3.38%	31.2	2.09%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-1	-3.942e+00	0.1473	78.0	5.07%	52.1	3.49%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-3.908e+00	0.1495	12.0	0.78%	3.1	0.21%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-1	-3.872e+00	0.1520	212.0	13.79%	169.0	11.34%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-3.870e+00	0.1520	231.0	15.03%	185.1	12.43%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-3.810e+00	0.1558	30.0	1.95%	15.1	1.01%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-3.788e+00	0.1564	76.0	4.94%	51.7	3.47%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-3.705e+00	0.1670	78.0	5.07%	53.1	3.56%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-1	-3.573e+00	0.1874	13.0	0.85%	4.7	0.32%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-3.508e+00	0.1965	22.0	1.43%	10.5	0.71%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-3.490e+00	0.1965	16.0	1.04%	6.5	0.44%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-3.490e+00	0.1965	16.0	1.04%	6.9	0.46%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-1	-3.331e+00	0.2232	1263.0	82.17%	1185.5	79.56%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-3.252e+00	0.2377	379.0	24.66%	326.8	21.93%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-1	-3.190e+00	0.2489	184.0	11.97%	148.9	9.99%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-3.122e+00	0.2623	18.0	1.17%	8.2	0.55%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1	-3.100e+00	0.2640	15.0	0.98%	6.5	0.44%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-2.967e+00	0.2972	10.0	0.65%	3.3	0.22%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-2.957e+00	0.2972	103.0	6.70%	78.2	5.25%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-1	-2.946e+00	0.2972	96.0	6.25%	72.1	4.84%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-2.942e+00	0.2972	51.0	3.32%	34.7	2.33%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-2.935e+00	0.2972	23.0	1.50%	12.2	0.82%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-2.935e+00	0.2972	23.0	1.50%	12.7	0.85%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-2.908e+00	0.2972	13.0	0.85%	5.4	0.36%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-2.851e+00	0.3022	20.0	1.30%	10.2	0.69%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-2.848e+00	0.3022	28.0	1.82%	16.7	1.12%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-2.812e+00	0.3058	8.0	0.52%	2.8	0.18%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-2.695e+00	0.3351	6.0	0.39%	1.7	0.11%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-1	-2.695e+00	0.3351	6.0	0.39%	2.0	0.13%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-2.651e+00	0.3456	119.0	7.74%	94.4	6.34%
SeqBias: CG bias	SSSSSSSSSS	1e-1	-2.644e+00	0.3456	603.0	39.23%	545.1	36.58%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-1	-2.555e+00	0.3667	55.0	3.58%	39.0	2.62%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-2.555e+00	0.3667	55.0	3.58%	39.4	2.64%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-1	-2.521e+00	0.3747	12.0	0.78%	6.0	0.40%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-2.473e+00	0.3886	24.0	1.56%	14.7	0.98%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-1	-2.470e+00	0.3886	87.0	5.66%	67.9	4.56%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-1	-2.436e+00	0.3940	40.0	2.60%	27.9	1.87%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.288e+00	0.4511	32.0	2.08%	21.0	1.41%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-2.246e+00	0.4654	18.0	1.17%	10.4	0.70%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-2.241e+00	0.4654	33.0	2.15%	22.3	1.49%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-2.162e+00	0.4950	41.0	2.67%	29.0	1.95%
SeqBias: CA-repeat	CACACACACA	1e0	-2.161e+00	0.4950	341.0	22.19%	303.3	20.36%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-2.153e+00	0.4950	55.0	3.58%	41.5	2.79%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-2.149e+00	0.4950	5.0	0.33%	1.1	0.07%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.149e+00	0.4950	5.0	0.33%	1.8	0.12%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.149e+00	0.4950	5.0	0.33%	1.4	0.09%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-2.149e+00	0.4950	5.0	0.33%	1.6	0.11%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-2.141e+00	0.4950	71.0	4.62%	55.8	3.75%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.094e+00	0.4950	8.0	0.52%	3.6	0.24%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-2.094e+00	0.4950	8.0	0.52%	3.9	0.26%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.094e+00	0.4950	8.0	0.52%	3.3	0.22%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-2.091e+00	0.4950	20.0	1.30%	12.9	0.86%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-2.074e+00	0.4950	31.0	2.02%	21.3	1.43%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-2.067e+00	0.4950	93.0	6.05%	75.7	5.08%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-2.047e+00	0.4950	136.0	8.85%	115.0	7.72%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-2.043e+00	0.4950	16.0	1.04%	9.4	0.63%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-2.041e+00	0.4950	369.0	24.01%	331.2	22.23%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-2.034e+00	0.4950	3.0	0.20%	0.0	0.00%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.034e+00	0.4950	3.0	0.20%	0.0	0.00%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.034e+00	0.4950	3.0	0.20%	0.4	0.03%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.034e+00	0.4950	3.0	0.20%	0.7	0.05%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.993e+00	0.4950	62.0	4.03%	49.0	3.29%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.978e+00	0.4950	40.0	2.60%	29.8	2.00%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.928e+00	0.4950	9.0	0.59%	4.2	0.29%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.928e+00	0.4950	9.0	0.59%	4.7	0.32%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.894e+00	0.5062	96.0	6.25%	79.1	5.31%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.859e+00	0.5199	37.0	2.41%	27.4	1.84%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-1.830e+00	0.5305	124.0	8.07%	105.0	7.05%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-1.802e+00	0.5409	39.0	2.54%	29.8	2.00%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-1.773e+00	0.5522	48.0	3.12%	37.3	2.50%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.752e+00	0.5546	49.0	3.19%	39.0	2.61%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.752e+00	0.5546	49.0	3.19%	38.8	2.60%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.710e+00	0.5738	35.0	2.28%	26.5	1.78%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.699e+00	0.5738	16.0	1.04%	11.0	0.74%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.699e+00	0.5738	16.0	1.04%	10.1	0.68%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.644e+00	0.5984	17.0	1.11%	11.9	0.80%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.624e+00	0.5984	4.0	0.26%	1.7	0.11%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-1.624e+00	0.5984	4.0	0.26%	1.3	0.09%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.624e+00	0.5984	4.0	0.26%	1.6	0.10%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.567e+00	0.6262	8.0	0.52%	4.4	0.30%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.556e+00	0.6282	13.0	0.85%	8.2	0.55%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.551e+00	0.6282	19.0	1.24%	13.4	0.90%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.474e+00	0.6711	9.0	0.59%	5.4	0.36%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.456e+00	0.6785	38.0	2.47%	30.6	2.05%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.430e+00	0.6909	5.0	0.33%	2.4	0.16%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.420e+00	0.6928	40.0	2.60%	32.6	2.19%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.420e+00	0.6928	50.0	3.25%	41.1	2.76%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.402e+00	0.6928	100.0	6.51%	87.3	5.86%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.402e+00	0.6928	100.0	6.51%	87.8	5.89%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.388e+00	0.6951	42.0	2.73%	34.1	2.29%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-1.369e+00	0.7032	17.0	1.11%	12.9	0.87%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.356e+00	0.7032	2.0	0.13%	0.0	0.00%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.356e+00	0.7032	2.0	0.13%	0.9	0.06%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.356e+00	0.7032	2.0	0.13%	0.7	0.05%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.356e+00	0.7032	2.0	0.13%	0.0	0.00%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.356e+00	0.7032	2.0	0.13%	0.0	0.00%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.356e+00	0.7032	2.0	0.13%	0.0	0.00%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.335e+00	0.7032	18.0	1.17%	13.5	0.91%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-1.313e+00	0.7037	6.0	0.39%	3.1	0.21%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.302e+00	0.7067	60.0	3.90%	51.3	3.44%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.295e+00	0.7067	28.0	1.82%	22.6	1.51%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.282e+00	0.7112	75.0	4.88%	65.6	4.40%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.258e+00	0.7236	30.0	1.95%	25.0	1.68%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.232e+00	0.7382	7.0	0.46%	4.2	0.28%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.229e+00	0.7382	97.0	6.31%	86.6	5.81%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-1.211e+00	0.7437	1465.0	95.32%	1413.3	94.84%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.171e+00	0.7640	8.0	0.52%	5.2	0.35%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.171e+00	0.7640	8.0	0.52%	5.1	0.35%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.153e+00	0.7734	26.0	1.69%	21.3	1.43%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.109e+00	0.8026	55.0	3.58%	48.9	3.28%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.086e+00	0.8112	10.0	0.65%	7.1	0.48%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.086e+00	0.8112	10.0	0.65%	7.8	0.52%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.057e+00	0.8302	21.0	1.37%	17.5	1.17%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.041e+00	0.8380	22.0	1.43%	18.7	1.25%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.027e+00	0.8450	23.0	1.50%	19.8	1.33%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.026e+00	0.8450	4.0	0.26%	2.9	0.19%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.026e+00	0.8450	4.0	0.26%	2.0	0.14%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-1.026e+00	0.8450	4.0	0.26%	2.9	0.19%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.013e+00	0.8450	147.0	9.56%	136.1	9.13%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.004e+00	0.8450	13.0	0.85%	10.9	0.73%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.001e+00	0.8450	25.0	1.63%	21.6	1.45%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-9.840e-01	0.8460	14.0	0.91%	11.5	0.77%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-9.670e-01	0.8555	5.0	0.33%	3.5	0.24%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-9.497e-01	0.8654	46.0	2.99%	41.4	2.78%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-9.082e-01	0.8968	35.0	2.28%	31.1	2.09%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-8.982e-01	0.9007	20.0	1.30%	17.8	1.20%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-8.960e-01	0.9007	7.0	0.46%	6.0	0.40%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-8.723e-01	0.9139	8.0	0.52%	6.1	0.41%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-8.589e-01	0.9210	43.0	2.80%	39.1	2.63%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-7.896e-01	0.9816	166.0	10.80%	158.7	10.65%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-7.282e-01	1.0000	52.0	3.38%	49.1	3.30%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-6.777e-01	1.0000	1.0	0.07%	0.7	0.05%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-6.777e-01	1.0000	1.0	0.07%	0.0	0.00%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-6.777e-01	1.0000	1.0	0.07%	0.0	0.00%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-6.777e-01	1.0000	1.0	0.07%	0.0	0.00%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-6.701e-01	1.0000	2.0	0.13%	1.4	0.10%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-6.644e-01	1.0000	3.0	0.20%	2.5	0.17%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-6.597e-01	1.0000	4.0	0.26%	3.4	0.23%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-6.597e-01	1.0000	4.0	0.26%	3.1	0.21%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-6.556e-01	1.0000	5.0	0.33%	4.8	0.32%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-6.556e-01	1.0000	5.0	0.33%	4.0	0.27%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-6.519e-01	1.0000	6.0	0.39%	6.0	0.40%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-6.425e-01	1.0000	9.0	0.59%	8.5	0.57%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-6.125e-01	1.0000	23.0	1.50%	22.1	1.48%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-6.095e-01	1.0000	196.0	12.75%	191.6	12.86%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-6.091e-01	1.0000	25.0	1.63%	24.4	1.64%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-6.059e-01	1.0000	27.0	1.76%	26.8	1.80%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-6.013e-01	1.0000	81.0	5.27%	79.4	5.33%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-5.900e-01	1.0000	38.0	2.47%	37.3	2.50%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-5.116e-01	1.0000	32.0	2.08%	32.4	2.18%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-5.115e-01	1.0000	33.0	2.15%	33.1	2.22%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-5.082e-01	1.0000	46.0	2.99%	46.9	3.15%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-4.986e-01	1.0000	14.0	0.91%	15.0	1.00%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-4.929e-01	1.0000	1107.0	72.02%	1079.2	72.43%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-4.800e-01	1.0000	9.0	0.59%	9.9	0.66%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-4.559e-01	1.0000	6.0	0.39%	6.2	0.42%
Tal1	CATCTG	1e0	-4.439e-01	1.0000	74.0	4.81%	75.6	5.07%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-4.305e-01	1.0000	120.0	7.81%	121.3	8.14%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-4.250e-01	1.0000	4.0	0.26%	4.5	0.30%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-4.250e-01	1.0000	4.0	0.26%	4.6	0.31%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-4.250e-01	1.0000	4.0	0.26%	4.8	0.32%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-4.170e-01	1.0000	21.0	1.37%	22.3	1.50%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-3.925e-01	1.0000	57.0	3.71%	59.4	3.98%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-3.859e-01	1.0000	13.0	0.85%	14.4	0.97%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-3.841e-01	1.0000	44.0	2.86%	46.2	3.10%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-3.797e-01	1.0000	12.0	0.78%	13.9	0.93%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-3.654e-01	1.0000	1449.0	94.27%	1410.9	94.69%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-3.581e-01	1.0000	91.0	5.92%	94.1	6.32%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-3.578e-01	1.0000	2.0	0.13%	3.0	0.20%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-3.554e-01	1.0000	26.0	1.69%	29.0	1.94%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-3.271e-01	1.0000	18.0	1.17%	20.5	1.37%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-3.253e-01	1.0000	107.0	6.96%	111.4	7.48%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-3.227e-01	1.0000	94.0	6.12%	98.3	6.60%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-3.222e-01	1.0000	17.0	1.11%	19.3	1.29%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-3.188e-01	1.0000	36.0	2.34%	39.8	2.67%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-3.159e-01	1.0000	6.0	0.39%	7.5	0.50%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-3.159e-01	1.0000	6.0	0.39%	7.5	0.50%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-3.159e-01	1.0000	6.0	0.39%	7.5	0.50%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-3.159e-01	1.0000	6.0	0.39%	7.5	0.50%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-3.158e-01	1.0000	76.0	4.94%	80.6	5.41%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-3.147e-01	1.0000	307.0	19.97%	310.5	20.84%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-3.126e-01	1.0000	33.0	2.15%	36.8	2.47%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-3.073e-01	1.0000	63.0	4.10%	67.7	4.55%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.968e-01	1.0000	5.0	0.33%	6.8	0.45%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-2.968e-01	1.0000	5.0	0.33%	6.3	0.42%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-2.897e-01	1.0000	12.0	0.78%	14.4	0.97%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.810e-01	1.0000	11.0	0.72%	13.2	0.88%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-2.774e-01	1.0000	1.0	0.07%	1.3	0.09%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-2.712e-01	1.0000	10.0	0.65%	12.1	0.81%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-2.702e-01	1.0000	20.0	1.30%	23.8	1.60%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-2.512e-01	1.0000	29.0	1.89%	33.5	2.25%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.405e-01	1.0000	3.0	0.20%	4.1	0.27%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-2.349e-01	1.0000	14.0	0.91%	17.7	1.19%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-2.336e-01	1.0000	24.0	1.56%	28.9	1.94%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-2.313e-01	1.0000	235.0	15.29%	243.3	16.33%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-2.273e-01	1.0000	13.0	0.85%	16.8	1.12%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-2.206e-01	1.0000	21.0	1.37%	25.1	1.68%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.166e-01	1.0000	6.0	0.39%	8.2	0.55%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-2.115e-01	1.0000	68.0	4.42%	76.0	5.10%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.104e-01	1.0000	100.0	6.51%	108.3	7.27%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-2.097e-01	1.0000	11.0	0.72%	14.0	0.94%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.039e-01	1.0000	28.0	1.82%	33.5	2.25%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.969e-01	1.0000	5.0	0.33%	7.9	0.53%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.957e-01	1.0000	2.0	0.13%	3.4	0.23%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.957e-01	1.0000	2.0	0.13%	3.1	0.21%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.957e-01	1.0000	2.0	0.13%	3.4	0.23%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.957e-01	1.0000	2.0	0.13%	3.1	0.21%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.885e-01	1.0000	9.0	0.59%	12.7	0.85%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.732e-01	1.0000	4.0	0.26%	6.0	0.40%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.731e-01	1.0000	30.0	1.95%	36.3	2.43%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-1.526e-01	1.0000	46.0	2.99%	54.6	3.67%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.489e-01	1.0000	16.0	1.04%	21.3	1.43%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.467e-01	1.0000	6.0	0.39%	9.4	0.63%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.442e-01	1.0000	3.0	0.20%	5.8	0.39%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.442e-01	1.0000	3.0	0.20%	5.3	0.36%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.442e-01	1.0000	3.0	0.20%	5.6	0.37%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.312e-01	1.0000	100.0	6.51%	112.6	7.56%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.291e-01	1.0000	5.0	0.33%	8.9	0.59%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.269e-01	1.0000	1.0	0.07%	2.6	0.18%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.269e-01	1.0000	1.0	0.07%	2.3	0.15%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.234e-01	1.0000	33.0	2.15%	41.5	2.79%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.206e-01	1.0000	32.0	2.08%	41.0	2.75%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.192e-01	1.0000	17.0	1.11%	23.7	1.59%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.132e-01	1.0000	22.0	1.43%	29.9	2.00%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.116e-01	1.0000	7.0	0.46%	11.5	0.78%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.116e-01	1.0000	7.0	0.46%	11.6	0.78%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.090e-01	1.0000	28.0	1.82%	36.2	2.43%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.089e-01	1.0000	4.0	0.26%	7.7	0.52%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.055e-01	1.0000	56.0	3.64%	67.7	4.55%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-9.819e-02	1.0000	6.0	0.39%	10.2	0.68%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-9.575e-02	1.0000	18.0	1.17%	25.4	1.71%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-9.543e-02	1.0000	165.0	10.74%	182.1	12.22%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-8.617e-02	1.0000	35.0	2.28%	45.9	3.08%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-8.437e-02	1.0000	27.0	1.76%	36.8	2.47%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-8.357e-02	1.0000	5.0	0.33%	9.1	0.61%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-8.357e-02	1.0000	5.0	0.33%	9.2	0.62%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-8.357e-02	1.0000	5.0	0.33%	9.8	0.66%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-8.182e-02	1.0000	11.0	0.72%	17.8	1.20%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-7.194e-02	1.0000	29.0	1.89%	39.9	2.68%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-7.005e-02	1.0000	13.0	0.85%	20.5	1.37%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-6.578e-02	1.0000	33.0	2.15%	44.5	2.99%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-6.487e-02	1.0000	6.0	0.39%	11.1	0.75%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-6.436e-02	1.0000	12.0	0.78%	19.4	1.30%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-5.906e-02	1.0000	2.0	0.13%	5.6	0.37%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-5.821e-02	1.0000	36.0	2.34%	48.7	3.27%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-5.821e-02	1.0000	36.0	2.34%	48.2	3.23%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-5.707e-02	1.0000	29.0	1.89%	40.1	2.69%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-5.058e-02	1.0000	113.0	7.35%	133.9	8.98%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-5.041e-02	1.0000	3.0	0.20%	7.4	0.50%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-5.041e-02	1.0000	3.0	0.20%	7.5	0.51%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-4.544e-02	1.0000	24.0	1.56%	35.8	2.40%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-4.415e-02	1.0000	15.0	0.98%	24.8	1.66%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-4.231e-02	1.0000	6.0	0.39%	12.4	0.84%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-4.109e-02	1.0000	53.0	3.45%	69.0	4.63%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-3.565e-02	1.0000	1391.0	90.50%	1375.4	92.30%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-3.520e-02	1.0000	29.0	1.89%	42.3	2.84%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-3.347e-02	1.0000	114.0	7.42%	138.0	9.26%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-3.316e-02	1.0000	19.0	1.24%	30.3	2.04%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-2.725e-02	1.0000	6.0	0.39%	13.1	0.88%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-2.667e-02	1.0000	20.0	1.30%	32.9	2.21%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-2.606e-02	1.0000	33.0	2.15%	48.2	3.23%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.606e-02	1.0000	33.0	2.15%	48.5	3.25%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-2.591e-02	1.0000	28.0	1.82%	42.1	2.83%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-2.446e-02	1.0000	27.0	1.76%	41.1	2.76%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-2.436e-02	1.0000	80.0	5.20%	102.9	6.91%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.352e-02	1.0000	36.0	2.34%	52.6	3.53%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-2.246e-02	1.0000	35.0	2.28%	51.1	3.43%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.147e-02	1.0000	21.0	1.37%	34.9	2.34%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.147e-02	1.0000	21.0	1.37%	34.4	2.31%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.141e-02	1.0000	34.0	2.21%	50.9	3.41%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-2.045e-02	1.0000	80.0	5.20%	103.8	6.97%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.885e-02	1.0000	116.0	7.55%	144.0	9.66%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.871e-02	1.0000	23.0	1.50%	37.4	2.51%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.869e-02	1.0000	27.0	1.76%	42.5	2.85%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.848e-02	1.0000	36.0	2.34%	53.2	3.57%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-1.466e-02	1.0000	14.0	0.91%	26.4	1.77%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.383e-02	1.0000	87.0	5.66%	113.7	7.63%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.090e-02	1.0000	6.0	0.39%	15.4	1.04%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.063e-02	1.0000	50.0	3.25%	72.5	4.87%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-8.946e-03	1.0000	57.0	3.71%	81.9	5.50%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-7.861e-03	1.0000	79.0	5.14%	107.5	7.21%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-7.511e-03	1.0000	8.0	0.52%	19.3	1.29%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-6.784e-03	1.0000	6.0	0.39%	16.3	1.09%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-5.198e-03	1.0000	45.0	2.93%	69.6	4.67%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-4.268e-03	1.0000	46.0	2.99%	71.6	4.81%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-4.177e-03	1.0000	6.0	0.39%	18.0	1.21%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-3.957e-03	1.0000	15.0	0.98%	31.8	2.13%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-3.901e-03	1.0000	29.0	1.89%	50.1	3.36%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-3.420e-03	1.0000	1.0	0.07%	7.3	0.49%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-2.515e-03	1.0000	95.0	6.18%	131.1	8.80%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-2.456e-03	1.0000	125.0	8.13%	165.2	11.08%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.432e-03	1.0000	19.0	1.24%	38.4	2.58%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-2.198e-03	1.0000	16.0	1.04%	34.4	2.31%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.866e-03	1.0000	121.0	7.87%	162.1	10.88%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.709e-03	1.0000	27.0	1.76%	50.1	3.36%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.392e-03	1.0000	45.0	2.93%	74.5	5.00%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.068e-03	1.0000	38.0	2.47%	66.1	4.43%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.034e-03	1.0000	9.0	0.59%	25.8	1.73%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-8.830e-04	1.0000	27.0	1.76%	52.3	3.51%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-8.360e-04	1.0000	7.0	0.46%	22.6	1.52%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-8.340e-04	1.0000	106.0	6.90%	149.7	10.05%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-5.680e-04	1.0000	48.0	3.12%	81.6	5.48%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-5.640e-04	1.0000	4.0	0.26%	17.9	1.20%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-5.060e-04	1.0000	7.0	0.46%	23.5	1.57%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-4.700e-04	1.0000	53.0	3.45%	88.3	5.93%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-3.660e-04	1.0000	21.0	1.37%	46.3	3.10%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.270e-04	1.0000	51.0	3.32%	90.5	6.08%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-5.300e-05	1.0000	58.0	3.77%	103.0	6.91%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-3.000e-05	1.0000	46.0	2.99%	88.1	5.91%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.000e-05	1.0000	54.0	3.51%	100.4	6.74%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-7.000e-06	1.0000	8.0	0.52%	33.8	2.27%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-3.000e-06	1.0000	180.0	11.71%	260.5	17.49%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.000e-06	1.0000	82.0	5.34%	147.2	9.88%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-0.000e+00	1.0000	85.0	5.53%	153.5	10.30%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-0.000e+00	1.0000	33.0	2.15%	85.9	5.76%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-0.000e+00	1.0000	10.0	0.65%	55.4	3.72%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-0.000e+00	1.0000	0.0	0.00%	2.3	0.15%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-0.000e+00	1.0000	0.0	0.00%	2.7	0.18%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.7	0.05%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	1537.0	100.00%	1490.1	100.00%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	1.0	0.07%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	4.6	0.31%