Information for 9-CGTGGTTT (Motif 10)


Reverse Opposite:

p-value:1e-14
log p-value:-3.414e+01
Information Content per bp:1.607
Number of Target Sequences with motif362.0
Percentage of Target Sequences with motif14.79%
Number of Background Sequences with motif196.4
Percentage of Background Sequences with motif7.75%
Average Position of motif in Targets35.1 +/- 20.1bp
Average Position of motif in Background39.3 +/- 19.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:1
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--CGTGGTTT
NNTGTGGTTT

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-CGTGGTTT-
CTGTGGTTTN

RUNX1/MA0002.2/Jaspar

Match Rank:3
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---CGTGGTTT
GTCTGTGGTTT

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--CGTGGTTT
GCTGTGGTTT

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---CGTGGTTT-
NNHTGTGGTTWN

pan/dmmpmm(Down)/fly

Match Rank:6
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:CGTGGTTT-
--TGTTTTT

grh/dmmpmm(Pollard)/fly

Match Rank:7
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CGTGGTTT---
-CTGGTTTTAT

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CGTGGTTT----
--TGGTTTCAGT

grh/dmmpmm(SeSiMCMC)/fly

Match Rank:9
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CGTGGTTT
-CTGGTTC

RUNX3/MA0684.1/Jaspar

Match Rank:10
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CGTGGTTT
TTTGCGGTTT