Information for 10-GCCTGTAA (Motif 11)


Reverse Opposite:

p-value:1e-14
log p-value:-3.247e+01
Information Content per bp:1.951
Number of Target Sequences with motif139.0
Percentage of Target Sequences with motif5.68%
Number of Background Sequences with motif42.6
Percentage of Background Sequences with motif1.68%
Average Position of motif in Targets38.7 +/- 18.2bp
Average Position of motif in Background40.4 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HMRA2/MA0318.1/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GCCTGTAA-
-CATGTAAT

MATALPHA2/MA0328.2/Jaspar

Match Rank:2
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GCCTGTAA-
-CGTGTAAT

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCCTGTAA
-GCTGTG-

SOK2(MacIsaac)/Yeast

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GCCTGTAA
TTGCCTGC--

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCCTGTAA-
-GCTGTCAA

PH0141.1_Pknox2/Jaspar

Match Rank:6
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GCCTGTAA----
AAGCACCTGTCAATAT

INO4/MA0322.1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCCTGTAA-
GCATGTGAA

INO4(MacIsaac)/Yeast

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCCTGTAA-
GCATGTGAA

achi/MA0207.1/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCCTGTAA
--CTGTCA

ara/MA0210.1/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GCCTGTAA
---TGTTA