Information for 8-GAGACACYRTCT (Motif 12)


Reverse Opposite:

p-value:1e-14
log p-value:-3.239e+01
Information Content per bp:1.729
Number of Target Sequences with motif112.0
Percentage of Target Sequences with motif4.58%
Number of Background Sequences with motif28.0
Percentage of Background Sequences with motif1.10%
Average Position of motif in Targets37.2 +/- 19.7bp
Average Position of motif in Background31.7 +/- 20.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GAGACACYRTCT------
NDBAGATRWTATCTVNNNNN

ARG80/MA0271.1/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GAGACACYRTCT
-AGACGC-----

ARG80(MacIsaac)/Yeast

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GAGACACYRTCT
-AGACGC-----

PB0125.1_Gata3_2/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GAGACACYRTCT------
NNNNNCGATANNATCTNNNNAN

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.56
Offset:6
Orientation:forward strand
Alignment:GAGACACYRTCT--
------CTGTCTGG

Six4/MA0204.1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAGACACYRTCT
TGATAC-------

Six3/MA0631.1/Jaspar

Match Rank:7
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------GAGACACYRTCT
ANANGTGATACCCTATN-

PH0163.1_Six3/Jaspar

Match Rank:8
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------GAGACACYRTCT
ANANGTGATACCCTATN-

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GAGACACYRTCT--
----VBSYGTCTGG

STE12/MA0393.1/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GAGACACYRTCT
TGAAACA------