Information for 17-ACTGTGATAA (Motif 20)


Reverse Opposite:

p-value:1e-9
log p-value:-2.152e+01
Information Content per bp:1.718
Number of Target Sequences with motif70.0
Percentage of Target Sequences with motif2.86%
Number of Background Sequences with motif16.7
Percentage of Background Sequences with motif0.66%
Average Position of motif in Targets38.7 +/- 17.8bp
Average Position of motif in Background26.1 +/- 19.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

prd/dmmpmm(Bigfoot)/fly

Match Rank:1
Score:0.74
Offset:3
Orientation:forward strand
Alignment:ACTGTGATAA-
---GTGATAAT

Optix/dmmpmm(Noyes)/fly

Match Rank:2
Score:0.74
Offset:1
Orientation:forward strand
Alignment:ACTGTGATAA
-ANGTGATA-

Optix/dmmpmm(Noyes_hd)/fly

Match Rank:3
Score:0.73
Offset:1
Orientation:forward strand
Alignment:ACTGTGATAA-
-AAGTGATAAA

prd/dmmpmm(SeSiMCMC)/fly

Match Rank:4
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:ACTGTGATAA--
---GTGATAATN

ems/dmmpmm(Pollard)/fly

Match Rank:5
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:ACTGTGATAA
--TGTCATNA

elt-3/MA0542.1/Jaspar

Match Rank:6
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:ACTGTGATAA--
----TGATAAGA

srp/dmmpmm(Bergman)/fly

Match Rank:7
Score:0.68
Offset:3
Orientation:forward strand
Alignment:ACTGTGATAA---
---GCGATAAGAN

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:8
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-ACTGTGATAA-
NNHTGTGGTTWN

MET28/MA0332.1/Jaspar

Match Rank:9
Score:0.68
Offset:1
Orientation:forward strand
Alignment:ACTGTGATAA
-CTGTGG---

MET28(MacIsaac)/Yeast

Match Rank:10
Score:0.68
Offset:1
Orientation:forward strand
Alignment:ACTGTGATAA
-CTGTGG---