Information for 18-CAGCCCGGGC (Motif 21)


Reverse Opposite:

p-value:1e-9
log p-value:-2.101e+01
Information Content per bp:1.547
Number of Target Sequences with motif59.0
Percentage of Target Sequences with motif2.41%
Number of Background Sequences with motif11.8
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets37.8 +/- 20.3bp
Average Position of motif in Background27.4 +/- 10.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SKN7/SKN7_H2O2Lo/[](Harbison)/Yeast

Match Rank:1
Score:0.75
Offset:2
Orientation:forward strand
Alignment:CAGCCCGGGC-
--GCCNGGGCC

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CAGCCCGGGC----
ATGCCCGGGCATGT

PUT3/MA0358.1/Jaspar

Match Rank:3
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CAGCCCGGGC
-TTCCCGGG-

SKN7(MacIsaac)/Yeast

Match Rank:4
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CAGCCCGGGC-
---TCCGGGCC

SWI5/Literature(Harbison)/Yeast

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCCGGGC
CCAGCA-----

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CAGCCCGGGC-
-TGCCCAGNHW

NHP10/MA0344.1/Jaspar

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CAGCCCGGGC
--TCCCCGGC

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAGCCCGGGC
GAGSCCGAGC

Zfx/MA0146.2/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CAGCCCGGGC---
GGGGCCGAGGCCTG

ROX1(MacIsaac)/Yeast

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CAGCCCGGGC
ANAAGCCCGC--