Information for 22-NNHCACGDVR (Motif 24)


Reverse Opposite:

p-value:1e-7
log p-value:-1.748e+01
Information Content per bp:1.354
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif1.51%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets41.7 +/- 21.0bp
Average Position of motif in Background23.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

O2(bZIP)/Zea mays/AthaMap

Match Rank:1
Score:0.78
Offset:1
Orientation:forward strand
Alignment:NNHCACGDVR-
-GCCACGTGAC

TGA1a(bZIP)/Nicotiana tabacum/AthaMap

Match Rank:2
Score:0.76
Offset:1
Orientation:forward strand
Alignment:NNHCACGDVR-
-CTCACGTGAG

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:3
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:NNHCACGDVR
--GCACGTNC

Mitf/MA0620.1/Jaspar

Match Rank:4
Score:0.75
Offset:0
Orientation:forward strand
Alignment:NNHCACGDVR
GGTCACGTGG

BIM1/MA0964.1/Jaspar

Match Rank:5
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:NNHCACGDVR
NNNCACGTGN

Deaf1/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:NNHCACGDVR
---CACGAA-

Deaf1/MA0185.1/Jaspar

Match Rank:7
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:NNHCACGDVR
---CACGAA-

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:8
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:NNHCACGDVR
-BGCACGTA-

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:NNHCACGDVR-
---CACGTGGN

TYE7(MacIsaac)/Yeast

Match Rank:10
Score:0.73
Offset:1
Orientation:forward strand
Alignment:NNHCACGDVR
-GTCACGTG-