Information for 18-GCCKAGGA (Motif 25)


Reverse Opposite:

p-value:1e-7
log p-value:-1.730e+01
Information Content per bp:1.761
Number of Target Sequences with motif58.0
Percentage of Target Sequences with motif2.37%
Number of Background Sequences with motif14.5
Percentage of Background Sequences with motif0.57%
Average Position of motif in Targets33.2 +/- 19.8bp
Average Position of motif in Background22.8 +/- 13.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NHP10/MA0344.1/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GCCKAGGA
GCCGGGGA

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCCKAGGA
AGGCCTAG--

RIM101/MA0368.1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCCKAGGA
CGCCAAG--

IME1(MacIsaac)/Yeast

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCCKAGGA
CCGCCGAG--

SKN7(MacIsaac)/Yeast

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCCKAGGA
GGCCCGGA-

UME6(MacIsaac)/Yeast

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCCKAGGA
TAGCCGCCGA

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:7
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------GCCKAGGA
GGGGCTYGKCTGGGA

IME1/MA0320.1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCCKAGGA
CCGCCGAG--

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCCKAGGA-
TGCCCAGNHW

XBP1(MacIsaac)/Yeast

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCCKAGGA
CTCGAGGA