Information for 17-GCTGGAGTGCAG (Motif 27)


Reverse Opposite:

p-value:1e-6
log p-value:-1.479e+01
Information Content per bp:1.852
Number of Target Sequences with motif53.0
Percentage of Target Sequences with motif2.17%
Number of Background Sequences with motif14.9
Percentage of Background Sequences with motif0.59%
Average Position of motif in Targets38.1 +/- 13.2bp
Average Position of motif in Background46.1 +/- 18.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCTGGAGTGCAG
-BTBRAGTGSN-

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCTGGAGTGCAG
-CTYRAGTGSY-

vnd/dmmpmm(Pollard)/fly

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GCTGGAGTGCAG
GCTCAAGTGC--

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCTGGAGTGCAG
CCWGGAATGY--

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCTGGAGTGCAG
-CTTGAGTGGCT

RCS1/RCS1_H2O2Hi/35-RCS1(Harbison)/Yeast

Match Rank:6
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GCTGGAGTGCAG-
----GGGTGCANT

NKX2-8/MA0673.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCTGGAGTGCAG
-NTCAAGTGG--

z/dmmpmm(SeSiMCMC)/fly

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GCTGGAGTGCAG
--TTGAGTG---

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GCTGGAGTGCAG
--TTRAGTGSYK

PB0091.1_Zbtb3_1/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GCTGGAGTGCAG--
NNNANTGCAGTGCNNTT