Information for 22-AGGAGATC (Motif 29)


Reverse Opposite:

p-value:1e-5
log p-value:-1.159e+01
Information Content per bp:1.919
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif1.96%
Number of Background Sequences with motif15.1
Percentage of Background Sequences with motif0.60%
Average Position of motif in Targets33.3 +/- 18.5bp
Average Position of motif in Background41.3 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SRD1/MA0389.1/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:AGGAGATC-
-GTAGATCT

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-AGGAGATC--
AAGGATATNTN

PDR8/MA0354.1/Jaspar

Match Rank:3
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AGGAGATC
ACGGAGAT-

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:4
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---AGGAGATC
NACAGGAAAT-

ECM23/MA0293.1/Jaspar

Match Rank:5
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AGGAGATC----
-AAAGATCTAAA

GAT4/MA0302.1/Jaspar

Match Rank:6
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AGGAGATC----
-AAAGATCTAAA

YNR063W/MA0432.1/Jaspar

Match Rank:7
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGGAGATC
TCGGAGAT-

GATA8/MA1017.1/Jaspar

Match Rank:8
Score:0.70
Offset:2
Orientation:forward strand
Alignment:AGGAGATC---
--CAGATCTAG

GAT3/MA0301.1/Jaspar

Match Rank:9
Score:0.69
Offset:3
Orientation:forward strand
Alignment:AGGAGATC----
---AGATCTACA

ZmHOX2a(2)(HD-HOX)/Zea mays/AthaMap

Match Rank:10
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AGGAGATC-
--CAGATCA