Information for 4-AGGTTGCAGTGA (Motif 7)


Reverse Opposite:

p-value:1e-19
log p-value:-4.563e+01
Information Content per bp:1.780
Number of Target Sequences with motif95.0
Percentage of Target Sequences with motif3.88%
Number of Background Sequences with motif9.7
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets38.0 +/- 23.1bp
Average Position of motif in Background41.1 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGGTTGCAGTGA
CTGTTGCTAGGS

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AGGTTGCAGTGA--
NNCGTTGCTATGGNN

RCS1/RCS1_H2O2Hi/35-RCS1(Harbison)/Yeast

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGGTTGCAGTGA
-GGGTGCANT--

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AGGTTGCAGTGA--
NCCGTTGCTANGNGN

PB0091.1_Zbtb3_1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGGTTGCAGTGA----
NNNANTGCAGTGCNNTT

RFX1/MA0365.1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AGGTTGCAGTGA
-GGTTGCCA---

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGGTTGCAGTGA
NATGTTGCAA---

Rfx1/MA0509.1/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AGGTTGCAGTGA----
--GTTGCCATGGNAAC

PB0054.1_Rfx3_1/Jaspar

Match Rank:9
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----AGGTTGCAGTGA------
NTNNNNNGTTGCTANGGNNCANA

ESR1/MA0112.3/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGGTTGCAGTGA----
AAGGTCACGGTGACCTG