Information for 7-GAAAAGAAAACA (Motif 12)


Reverse Opposite:

p-value:1e-7
log p-value:-1.721e+01
Information Content per bp:1.784
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets43.3 +/- 17.6bp
Average Position of motif in Background66.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Mecom/MA0029.1/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GAAAAGAAAACA
AAGATAAGATAACA

AZF1/MA0277.1/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GAAAAGAAAACA
AAAAAGAAA---

GLN3/GLN3_RAPA/8-GZF3,11-GLN3(Harbison)/Yeast

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GAAAAGAAAACA
GATAAGATA---

FKH2/FKH2_YPD/18-FKH1,18-FKH2(Harbison)/Yeast

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GAAAAGAAAACA-
-AAANGTAAACAA

DAL82/DAL82_SM/3-DAL82(Harbison)/Yeast

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GAAAAGAAAACA
GATAAGA-----

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GAAAAGAAAACA
CGGAAGTGAAAC--

GLN3(MacIsaac)/Yeast

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GAAAAGAAAACA
AGATAAGATA---

FOXP1/MA0481.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GAAAAGAAAACA---
CAAAAGTAAACAAAG

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:9
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GAAAAGAAAACA
----AGATAASR

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GAAAAGAAAACA
TGGAACAGMA----