Information for 2-GGCTGAGGCT (Motif 2)


Reverse Opposite:

p-value:1e-16
log p-value:-3.880e+01
Information Content per bp:1.690
Number of Target Sequences with motif176.0
Percentage of Target Sequences with motif4.61%
Number of Background Sequences with motif56.4
Percentage of Background Sequences with motif1.41%
Average Position of motif in Targets37.4 +/- 18.3bp
Average Position of motif in Background41.8 +/- 18.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GGCTGAGGCT
TGCCTGAGGCN

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GGCTGAGGCT
NGCCTNAGGCN

SWI5/Literature(Harbison)/Yeast

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GGCTGAGGCT
GGCTGA----

TFAP2A/MA0003.3/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GGCTGAGGCT
NGCCTGAGGCN

CDC5(MYB)/Arabidopsis thaliana/AthaMap

Match Rank:5
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GGCTGAGGCT
CGCGCTGAGCN-

CDC5/MA0579.1/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GGCTGAGGCT
CGCGCTGAGCN-

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:7
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GGCTGAGGCT--
ATTGCCTGAGGCAAT

CRZ1(MacIsaac)/Yeast

Match Rank:8
Score:0.64
Offset:4
Orientation:forward strand
Alignment:GGCTGAGGCT-
----GAGGCTG

Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGCTGAGGCT-
HTGCTGAGTCAT

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GGCTGAGGCT--
ANTGCCTGAGGCAAN