Information for 1-TCCCAGCHHNNN (Motif 1)


Reverse Opposite:

p-value:1e-47
log p-value:-1.094e+02
Information Content per bp:1.572
Number of Target Sequences with motif598.0
Percentage of Target Sequences with motif39.29%
Number of Background Sequences with motif216.6
Percentage of Background Sequences with motif15.49%
Average Position of motif in Targets35.9 +/- 20.3bp
Average Position of motif in Background36.5 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ACE2/MA0267.1/Jaspar

Match Rank:1
Score:0.79
Offset:1
Orientation:forward strand
Alignment:TCCCAGCHHNNN
-ACCAGCA----

SWI5/Literature(Harbison)/Yeast

Match Rank:2
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:TCCCAGCHHNNN
--CCAGCA----

SWI5/MA0402.1/Jaspar

Match Rank:3
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:TCCCAGCHHNNN
AACCAGCA----

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TCCCAGCHHNNN
TGCCCAGNHW---

Su(H)/dmmpmm(Bergman)/fly

Match Rank:5
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TCCCAGCHHNNN
CTCCCAC------

SWI5(MacIsaac)/Yeast

Match Rank:6
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TCCCAGCHHNNN
AACCAGCA----

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---TCCCAGCHHNNN
HTTTCCCASG-----

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:8
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---TCCCAGCHHNNN
ATTTCCCAGVAKSCY

ZMS1/MA0441.1/Jaspar

Match Rank:9
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TCCCAGCHHNNN
TTCCCCGCA----

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:10
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TCCCAGCHHNNN---
TCCCAGMCRAGCCCC