Information for 8-CCAGCACTTT (Motif 10)


Reverse Opposite:

p-value:1e-17
log p-value:-4.078e+01
Information Content per bp:1.852
Number of Target Sequences with motif145.0
Percentage of Target Sequences with motif9.53%
Number of Background Sequences with motif30.0
Percentage of Background Sequences with motif2.15%
Average Position of motif in Targets29.8 +/- 21.8bp
Average Position of motif in Background60.7 +/- 2.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CDF3/MA0974.1/Jaspar

Match Rank:1
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:CCAGCACTTT--
---NCACTTTTT

Dof3/MA0021.1/Jaspar

Match Rank:2
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:CCAGCACTTT
----CGCTTT

DOF2.5/MA0977.1/Jaspar

Match Rank:3
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:CCAGCACTTT--
----CACTTTTT

CDF2/MA0973.1/Jaspar

Match Rank:4
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CCAGCACTTT---
---NNACTTTTTN

SWI5(MacIsaac)/Yeast

Match Rank:5
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CCAGCACTTT
AACCAGCA----

PHYPADRAFT_38837/MA1022.1/Jaspar

Match Rank:6
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CCAGCACTTT---
---NNNCTTTTNN

PHYPADRAFT_153324/MA0989.1/Jaspar

Match Rank:7
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:CCAGCACTTT---
----NNCTTTTNN

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CCAGCACTTT-
-MRSCACTYAA

SWI5/MA0402.1/Jaspar

Match Rank:9
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CCAGCACTTT
AACCAGCA----

NKX3-2/MA0122.2/Jaspar

Match Rank:10
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CCAGCACTTT-
--ACCACTTAA