Information for 24-AGATCCCGCC (Motif 19)


Reverse Opposite:

p-value:1e-5
log p-value:-1.308e+01
Information Content per bp:1.700
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif1.77%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets48.3 +/- 15.8bp
Average Position of motif in Background44.3 +/- 9.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL011.1_XCPE1/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:AGATCCCGCC-
-GGTCCCGCCC

UGA3/MA0410.1/Jaspar

Match Rank:2
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:AGATCCCGCC-
---TCCCGCCG

ECM23/MA0293.1/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGATCCCGCC
AAAGATCTAAA-

PB0039.1_Klf7_1/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGATCCCGCC-----
TCGACCCCGCCCCTAT

GAT4/MA0302.1/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGATCCCGCC
AAAGATCTAAA-

ZmHOX2a(2)(HD-HOX)/Zea mays/AthaMap

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AGATCCCGCC
CAGATCA----

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:7
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AGATCCCGCC--
--TTCCCGCCWG

POL006.1_BREu/Jaspar

Match Rank:8
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AGATCCCGCC
--AGCGCGCC

SRD1/MA0389.1/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGATCCCGCC
GTAGATCT----

PB0164.1_Smad3_2/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGATCCCGCC------
TACGCCCCGCCACTCTG