Information for 1-YYCWGYCTCC (Motif 2)


Reverse Opposite:

p-value:1e-46
log p-value:-1.080e+02
Information Content per bp:1.474
Number of Target Sequences with motif470.0
Percentage of Target Sequences with motif30.88%
Number of Background Sequences with motif136.0
Percentage of Background Sequences with motif9.73%
Average Position of motif in Targets36.5 +/- 17.7bp
Average Position of motif in Background35.8 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CRZ1(MacIsaac)/Yeast

Match Rank:1
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:YYCWGYCTCC
--CAGCCAC-

RPN4/RPN4_H2O2Lo/[](Harbison)/Yeast

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:YYCWGYCTCC
-TTTGCCACC

RPN4(MacIsaac)/Yeast

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:YYCWGYCTCC-
TTTTGCCACCG

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-YYCWGYCTCC
GCTCGGSCTC-

SeqBias: GA-repeat

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-YYCWGYCTCC
TCTCTCTCTC-

ZNF263/MA0528.1/Jaspar

Match Rank:6
Score:0.55
Offset:-8
Orientation:reverse strand
Alignment:--------YYCWGYCTCC---
TCCTCCTCCCCCTCCTCCTCC

ARF1(ABI3/VP1)/Arabidopsis thaliana/AthaMap

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:YYCWGYCTCC--
-CTTGTCTCCCA

ADR1/Literature(Harbison)/Yeast

Match Rank:8
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:YYCWGYCTCC-
-----ACCCCN

ADR1(MacIsaac)/Yeast

Match Rank:9
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:YYCWGYCTCC-
-----ACCCCN

PB0124.1_Gabpa_2/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:YYCWGYCTCC-------
-CCGTCTTCCCCCTCAC