Information for 3-RGSCWGGGTGGC (Motif 4)


Reverse Opposite:

p-value:1e-29
log p-value:-6.844e+01
Information Content per bp:1.574
Number of Target Sequences with motif158.0
Percentage of Target Sequences with motif10.38%
Number of Background Sequences with motif15.8
Percentage of Background Sequences with motif1.13%
Average Position of motif in Targets34.1 +/- 19.9bp
Average Position of motif in Background41.9 +/- 14.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RPN4/MA0373.1/Jaspar

Match Rank:1
Score:0.63
Offset:6
Orientation:forward strand
Alignment:RGSCWGGGTGGC-
------GGTGGCG

AtMYB84(MYB)/Arabidopsis thaliana/AthaMap

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--RGSCWGGGTGGC
GGGGGGTAGGTGG-

RAX3/MA0576.1/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--RGSCWGGGTGGC
GGGGGGTAGGTGG-

ESR2/MA0258.2/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-RGSCWGGGTGGC--
AGGNCANNGTGACCT

SeqBias: polyC-repeat

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:RGSCWGGGTGGC
-GGGGGGGGGG-

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:RGSCWGGGTGGC-----
-NGTAGGTTGGCATNNN

EGR1/MA0162.2/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:RGSCWGGGTGGC--
GGCGGGGGCGGGGG

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:RGSCWGGGTGGC--
--CGTGGGTGGTCC

ZBTB7C/MA0695.1/Jaspar

Match Rank:9
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:RGSCWGGGTGGC---
---NTCGGTGGTCGC

RPN4/RPN4_H2O2Lo/[](Harbison)/Yeast

Match Rank:10
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:RGSCWGGGTGGC---
------GGTGGCAAA