Information for 4-GRGATTACMGGC (Motif 5)


Reverse Opposite:

p-value:1e-25
log p-value:-5.944e+01
Information Content per bp:1.789
Number of Target Sequences with motif198.0
Percentage of Target Sequences with motif13.01%
Number of Background Sequences with motif38.4
Percentage of Background Sequences with motif2.75%
Average Position of motif in Targets34.5 +/- 17.1bp
Average Position of motif in Background36.6 +/- 35.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Gsc/dmmpmm(Noyes)/fly

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GRGATTACMGGC
-GGATTA-----

Gsc/MA0190.1/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GRGATTACMGGC
-GGATTA-----

bcd/dmmpmm(Bergman)/fly

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GRGATTACMGGC
NGGATTAGNGG-

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GRGATTACMGGC
RGGATTAR----

Gsc/dmmpmm(Noyes_hd)/fly

Match Rank:5
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GRGATTACMGGC
NGGATTAANN--

oc/MA0234.1/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GRGATTACMGGC
-GGATTA-----

Pitx1/MA0682.1/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GRGATTACMGGC
GGGATTAA----

Ptx1/dmmpmm(Noyes_hd)/fly

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GRGATTACMGGC
GGGATTAACN--

bcd/MA0212.1/Jaspar

Match Rank:9
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GRGATTACMGGC
-GGATTA-----

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GRGATTACMGGC
NGGGATTA-----