Information for 5-CAGGAGGATCAC (Motif 6)


Reverse Opposite:

p-value:1e-24
log p-value:-5.715e+01
Information Content per bp:1.751
Number of Target Sequences with motif200.0
Percentage of Target Sequences with motif13.14%
Number of Background Sequences with motif42.0
Percentage of Background Sequences with motif3.00%
Average Position of motif in Targets37.6 +/- 18.6bp
Average Position of motif in Background30.9 +/- 18.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RTG3/Literature(Harbison)/Yeast

Match Rank:1
Score:0.59
Offset:6
Orientation:forward strand
Alignment:CAGGAGGATCAC
------GGTCAC

ttk/MA0460.1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAGGAGGATCAC
AAGGATAAT---

dif/Rel/dmmpmm(Bergman)/fly

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CAGGAGGATCAC-
--GGGGAATCCCC

GATA15/MA1016.1/Jaspar

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CAGGAGGATCAC-
----NNGATCANN

NFKB1/MA0105.4/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CAGGAGGATCAC--
-AGGGGAATCCCCT

ttk/dmmpmm(Noyes)/fly

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CAGGAGGATCAC-
CAAGGATAATCNAA

RAV1(2)(AP2/EREBP)/Arabidopsis thaliana/AthaMap

Match Rank:7
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CAGGAGGATCAC
GNNTCAGGTGAN----

RAV1(var.2)/MA0583.1/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CAGGAGGATCAC
GNNTCAGGTGAN----

PH0017.1_Cux1_2/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CAGGAGGATCAC--
TAATGATGATCACTA

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CAGGAGGATCAC-
-GGGGGAATCCCC