Information for 1-TCCCAGCHHYHY (Motif 1)


Reverse Opposite:

p-value:1e-67
log p-value:-1.554e+02
Information Content per bp:1.595
Number of Target Sequences with motif643.0
Percentage of Target Sequences with motif16.85%
Number of Background Sequences with motif197.9
Percentage of Background Sequences with motif4.92%
Average Position of motif in Targets37.3 +/- 20.5bp
Average Position of motif in Background35.4 +/- 21.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Su(H)/dmmpmm(Bergman)/fly

Match Rank:1
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-TCCCAGCHHYHY
CTCCCAC------

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---TCCCAGCHHYHY
HTTTCCCASG-----

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:3
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---TCCCAGCHHYHY
ATTTCCCAGVAKSCY

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TCCCAGCHHYHY
TGCCCAGNHW---

PB0098.1_Zfp410_1/Jaspar

Match Rank:5
Score:0.69
Offset:-7
Orientation:reverse strand
Alignment:-------TCCCAGCHHYHY
NNNTCCATCCCATAANN--

SWI5/Literature(Harbison)/Yeast

Match Rank:6
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:TCCCAGCHHYHY
--CCAGCA----

ACE2/MA0267.1/Jaspar

Match Rank:7
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TCCCAGCHHYHY
-ACCAGCA----

SWI5/MA0402.1/Jaspar

Match Rank:8
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TCCCAGCHHYHY
AACCAGCA----

Su(H)/dmmpmm(Papatsenko)/fly

Match Rank:9
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TCCCAGCHHYHY
GTTCCCACG-----

YPR022C/MA0436.1/Jaspar

Match Rank:10
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TCCCAGCHHYHY
CCCCACG-----