Information for 1-CYBGGGARGC (Motif 2)


Reverse Opposite:

p-value:1e-64
log p-value:-1.483e+02
Information Content per bp:1.702
Number of Target Sequences with motif945.0
Percentage of Target Sequences with motif24.76%
Number of Background Sequences with motif415.2
Percentage of Background Sequences with motif10.32%
Average Position of motif in Targets36.9 +/- 19.1bp
Average Position of motif in Background36.7 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GCR2/MA0305.1/Jaspar

Match Rank:1
Score:0.80
Offset:3
Orientation:reverse strand
Alignment:CYBGGGARGC
---NGGAAGC

GCR2(MacIsaac)/Yeast

Match Rank:2
Score:0.79
Offset:3
Orientation:reverse strand
Alignment:CYBGGGARGC
---NGGAAGC

MZF1/MA0056.1/Jaspar

Match Rank:3
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CYBGGGARGC
-TGGGGA---

GCR1(MacIsaac)/Yeast

Match Rank:4
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:CYBGGGARGC--
---TGGAAGCCC

NHP10/MA0344.1/Jaspar

Match Rank:5
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CYBGGGARGC
GCCGGGGA---

PUT3/MA0358.1/Jaspar

Match Rank:6
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CYBGGGARGC
CCCGGGAA--

GCR1/MA0304.1/Jaspar

Match Rank:7
Score:0.70
Offset:3
Orientation:forward strand
Alignment:CYBGGGARGC-
---TGGAAGCC

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CYBGGGARGC---
-TGGGGAAGGGCM

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CYBGGGARGC
CSTGGGAAAD

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:10
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CYBGGGARGC--
NDCAGGAARTNN