Information for 5-AGRATTRCTTGA (Motif 4)


Reverse Opposite:

p-value:1e-35
log p-value:-8.263e+01
Information Content per bp:1.657
Number of Target Sequences with motif298.0
Percentage of Target Sequences with motif7.81%
Number of Background Sequences with motif76.7
Percentage of Background Sequences with motif1.91%
Average Position of motif in Targets36.9 +/- 17.6bp
Average Position of motif in Background36.4 +/- 21.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

vnd/dmmpmm(Noyes_hd)/fly

Match Rank:1
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:AGRATTRCTTGA--
----NCACTTGAAA

vnd/MA0253.1/Jaspar

Match Rank:2
Score:0.71
Offset:5
Orientation:reverse strand
Alignment:AGRATTRCTTGA--
-----CACTTGAAA

NTL9/MA1046.1/Jaspar

Match Rank:3
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:AGRATTRCTTGA
---ATTACTTAA

vnd/dmmpmm(Papatsenko)/fly

Match Rank:4
Score:0.68
Offset:5
Orientation:reverse strand
Alignment:AGRATTRCTTGA-
-----CACTTGAN

tin/dmmpmm(Bigfoot)/fly

Match Rank:5
Score:0.67
Offset:5
Orientation:forward strand
Alignment:AGRATTRCTTGA
-----CACTTGA

tin/dmmpmm(SeSiMCMC)/fly

Match Rank:6
Score:0.65
Offset:5
Orientation:forward strand
Alignment:AGRATTRCTTGA-
-----CACTTGAG

tin/dmmpmm(Bergman)/fly

Match Rank:7
Score:0.65
Offset:5
Orientation:forward strand
Alignment:AGRATTRCTTGA
-----CACTTAA

tin/dmmpmm(Noyes_hd)/fly

Match Rank:8
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:AGRATTRCTTGA--
----CCACTTGAGN

ceh-22/MA0264.1/Jaspar

Match Rank:9
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AGRATTRCTTGA--
---ACCACTTGAAA

MA0264.1_ceh-22/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AGRATTRCTTGA--
---ACCACTTGAAA