Information for 9-CCCAGCCTGR (Motif 9)


Reverse Opposite:

p-value:1e-20
log p-value:-4.799e+01
Information Content per bp:1.635
Number of Target Sequences with motif390.0
Percentage of Target Sequences with motif10.22%
Number of Background Sequences with motif187.6
Percentage of Background Sequences with motif4.66%
Average Position of motif in Targets38.2 +/- 20.7bp
Average Position of motif in Background37.7 +/- 21.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SWI5/Literature(Harbison)/Yeast

Match Rank:1
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CCCAGCCTGR
-CCAGCA---

YML081W(MacIsaac)/Yeast

Match Rank:2
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CCCAGCCTGR-
-CCAGTCTGAA

CRZ1(MacIsaac)/Yeast

Match Rank:3
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CCCAGCCTGR
--CAGCCAC-

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CCCAGCCTGR
-BCAGACWA-

ACE2/MA0267.1/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CCCAGCCTGR
ACCAGCA---

SWI5/MA0402.1/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGCCTGR
AACCAGCA---

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CCCAGCCTGR
TGCCCAGNHW--

SWI5(MacIsaac)/Yeast

Match Rank:8
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGCCTGR
AACCAGCA---

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGCCTGR
DCTCAGCAGG-

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CCCAGCCTGR
-CCAGACAG-