Information for 9-GWGCCTGCAG (Motif 10)


Reverse Opposite:

p-value:1e-6
log p-value:-1.522e+01
Information Content per bp:1.648
Number of Target Sequences with motif83.0
Percentage of Target Sequences with motif6.16%
Number of Background Sequences with motif32.7
Percentage of Background Sequences with motif2.34%
Average Position of motif in Targets36.1 +/- 18.3bp
Average Position of motif in Background36.8 +/- 19.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SOK2/MA0385.1/Jaspar

Match Rank:1
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:GWGCCTGCAG--
-NNCCTGCAGGT

SOK2/SOK2_BUT14/4-SUT1(Harbison)/Yeast

Match Rank:2
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:GWGCCTGCAG
-TNCCTGCA-

PHD1/PHD1_BUT90/8-SUT1(Harbison)/Yeast

Match Rank:3
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:GWGCCTGCAG-
---CCTGCGGC

PHD1/MA0355.1/Jaspar

Match Rank:4
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GWGCCTGCAG--
--ACCTGCAGCA

SOK2(MacIsaac)/Yeast

Match Rank:5
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GWGCCTGCAG
TTGCCTGC--

Mad/dmmpmm(Down)/fly

Match Rank:6
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GWGCCTGCAG
CGCGACGCCAG

ABI3/MA0564.1/Jaspar

Match Rank:7
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GWGCCTGCAG
-TGCATGCAG

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GWGCCTGCAG---
---CCTGCTGAGH

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GWGCCTGCAG--
CCCCCTGCTGTG

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GWGCCTGCAG-----
TNTCCTGCTGTGNNG