Information for 10-TCAGAAGGAC (Motif 11)


Reverse Opposite:

p-value:1e-6
log p-value:-1.501e+01
Information Content per bp:1.701
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif1.56%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets43.6 +/- 18.6bp
Average Position of motif in Background52.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ttk/dmmpmm(SeSiMCMC)/fly

Match Rank:1
Score:0.74
Offset:3
Orientation:forward strand
Alignment:TCAGAAGGAC-
---GCAGGACC

ttk/dmmpmm(Bigfoot)/fly

Match Rank:2
Score:0.72
Offset:4
Orientation:reverse strand
Alignment:TCAGAAGGAC-
----CAGGACC

ttk/dmmpmm(Papatsenko)/fly

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:TCAGAAGGAC-
--GCCAGGACC

ZmHOX2a(1)(HD-HOX)/Zea mays/AthaMap

Match Rank:4
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:TCAGAAGGAC
---TTAGGAC

ttk/dmmpmm(Pollard)/fly

Match Rank:5
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TCAGAAGGAC----
--GCCAGGACCTCG

Rarg/MA0859.1/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TCAGAAGGAC--
AAGGTCAAAAGGTCAA

HLTF/MA0109.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TCAGAAGGAC
NNATAAGGNN

Rarb/MA0857.1/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----TCAGAAGGAC-
AAAGGTCAAAAGGTCA

RARA/MA0729.1/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TCAGAAGGAC----
GAGGTCAAAAGGTCAATG

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TCAGAAGGAC
DCTCAGCAGG--