Information for 11-TCAAGYAMTT (Motif 12)


Reverse Opposite:

p-value:1e-6
log p-value:-1.434e+01
Information Content per bp:1.669
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif4.23%
Number of Background Sequences with motif17.9
Percentage of Background Sequences with motif1.28%
Average Position of motif in Targets35.9 +/- 20.1bp
Average Position of motif in Background37.1 +/- 18.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NTL9/MA1046.1/Jaspar

Match Rank:1
Score:0.80
Offset:0
Orientation:forward strand
Alignment:TCAAGYAMTT
TTAAGTAAT-

PH0112.1_Nkx2-3/Jaspar

Match Rank:2
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--TCAAGYAMTT----
CTTTAAGTACTTAATG

PH0117.1_Nkx3-1/Jaspar

Match Rank:3
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---TCAAGYAMTT----
NATTTAAGTACTTANNA

PH0116.1_Nkx2-9/Jaspar

Match Rank:4
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---TCAAGYAMTT----
NATTTAAGTACTTNAAA

PH0009.1_Bsx/Jaspar

Match Rank:5
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TCAAGYAMTT-----
NTNAGNTAATTACCTN

PH0146.1_Pou3f1/Jaspar

Match Rank:6
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---TCAAGYAMTT----
NANTTAATTAATTANNN

PH0093.1_Lhx3/Jaspar

Match Rank:7
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----TCAAGYAMTT--
NNTATTTAATTAATTNN

PH0136.1_Phox2b/Jaspar

Match Rank:8
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TCAAGYAMTT---
CNNNTTAATTAATTNNN

PH0173.1_Uncx/Jaspar

Match Rank:9
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TCAAGYAMTT---
CNCNTTAATTAATTANN

PH0095.1_Lhx5/Jaspar

Match Rank:10
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----TCAAGYAMTT--
ANNATTTAATTAATTNN