Information for 3-GAAGGAAAGAAA (Motif 16)


Reverse Opposite:

p-value:1e-4
log p-value:-1.020e+01
Information Content per bp:1.762
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif2.82%
Number of Background Sequences with motif11.5
Percentage of Background Sequences with motif0.82%
Average Position of motif in Targets33.7 +/- 17.8bp
Average Position of motif in Background42.4 +/- 14.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

UME1/UME1_YPD/[](Harbison)/Yeast

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GAAGGAAAGAAA
-AAGGAAANGTA

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GAAGGAAAGAAA--
--AGAAACGAAAGT

AT/dmmpmm(Papatsenko)/fly

Match Rank:3
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GAAGGAAAGAAA
--ATGAACGAAT

PI/MA0559.1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GAAGGAAAGAAA-
CCAAAAAAGGAAAA

PB0015.1_Foxa2_1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GAAGGAAAGAAA---
AAAAAGTAAACAAAGAC

FOXP1/MA0481.1/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GAAGGAAAGAAA-
CAAAAGTAAACAAAG

AZF1/MA0277.1/Jaspar

Match Rank:7
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GAAGGAAAGAAA
---AAAAAGAAA

br(var.4)/MA0013.1/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GAAGGAAAGAAA
-TAGTAAACAAA

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GAAGGAAAGAAA-----
GGAAGGAAGGAAGGAAGG

Foxj3/MA0851.1/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GAAGGAAAGAAA---
AAAAAGTAAACAAACAC