Information for 18-ATAAGTGACA (Motif 20)


Reverse Opposite:

p-value:1e-3
log p-value:-8.850e+00
Information Content per bp:1.664
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif1.34%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets43.6 +/- 15.9bp
Average Position of motif in Background37.3 +/- 9.3bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX3-2/MA0122.2/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:ATAAGTGACA
TTAAGTGGN-

Vis/dmmpmm(Noyes_hd)/fly

Match Rank:2
Score:0.71
Offset:2
Orientation:forward strand
Alignment:ATAAGTGACA--
--ANNTGACAGN

Nkx2-5/MA0063.1/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:forward strand
Alignment:ATAAGTGACA
TTAATTG---

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:4
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:ATAAGTGACA
--ARNTGACA

Nkx3-1/MA0124.2/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:ATAAGTGACA
TTAAGTGGT-

br-Z1/dmmpmm(Bergman)/fly

Match Rank:6
Score:0.68
Offset:1
Orientation:forward strand
Alignment:ATAAGTGACA---
-TAAAAAACAAAA

vis/MA0252.1/Jaspar

Match Rank:7
Score:0.68
Offset:5
Orientation:forward strand
Alignment:ATAAGTGACA-
-----TGACAG

ISL2/MA0914.1/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:ATAAGTGACA
TTAAGTGC--

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:9
Score:0.67
Offset:2
Orientation:forward strand
Alignment:ATAAGTGACA--
--AGGTGTGAAM

tll/dmmpmm(Papatsenko)/fly

Match Rank:10
Score:0.67
Offset:1
Orientation:forward strand
Alignment:ATAAGTGACA
-AAAGTCAAA