Information for 19-GAGAGAGAGA (Motif 21)


Reverse Opposite:

p-value:1e-2
log p-value:-6.430e+00
Information Content per bp:1.826
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif1.34%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets35.5 +/- 17.6bp
Average Position of motif in Background34.4 +/- 10.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SeqBias: GA-repeat

Match Rank:1
Score:0.98
Offset:0
Orientation:forward strand
Alignment:GAGAGAGAGA
GAGAGAGAGA

Trl/dmmpmm(Down)/fly

Match Rank:2
Score:0.85
Offset:0
Orientation:forward strand
Alignment:GAGAGAGAGA--
GAGAGAGAGAGC

GAGA-repeat/SacCer-Promoters/Homer

Match Rank:3
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGAGAGA---
GAGAGAGARAGARAG

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:4
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-GAGAGAGAGA
RGAGAGAGAG-

Trl/dmmpmm(Pollard)/fly

Match Rank:5
Score:0.80
Offset:0
Orientation:forward strand
Alignment:GAGAGAGAGA
GAGAGAGCAA

Trl/MA0205.1/Jaspar

Match Rank:6
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GAGAGAGAGA
GAGAGAGCAA

Trl/dmmpmm(Bigfoot)/fly

Match Rank:7
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GAGAGAGAGA--
AGAGAGAGAGNAA

eor-1/MA0543.1/Jaspar

Match Rank:8
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---GAGAGAGAGA--
AGAGAGACGCAGAGA

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:9
Score:0.77
Offset:1
Orientation:forward strand
Alignment:GAGAGAGAGA
-RGAGAGAG-

Trl/dmmpmm(SeSiMCMC)/fly

Match Rank:10
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GAGAGAGAGA----
GAGAGAGAGAGCAA