Information for 2-AACACAGWAT (Motif 3)


Reverse Opposite:

p-value:1e-8
log p-value:-2.009e+01
Information Content per bp:1.744
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif2.37%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets37.0 +/- 20.5bp
Average Position of motif in Background37.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0061.1_Sox11_1/Jaspar

Match Rank:1
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----AACACAGWAT--
ATAAGAACAAAGGACTA

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----AACACAGWAT--
AGAAGAACAAAGGACTA

caup/MA0217.1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AACACAGWAT
TAACA------

mirr/MA0233.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AACACAGWAT
AAACA------

ara/MA0210.1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AACACAGWAT
TAACA------

lin-14/MA0261.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AACACAGWAT
GAACAC-----

MA0261.1_lin-14/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AACACAGWAT
GAACAC-----

PB0121.1_Foxj3_2/Jaspar

Match Rank:8
Score:0.62
Offset:-8
Orientation:forward strand
Alignment:--------AACACAGWAT
AACACCAAAACAAAGGA-

Mirr/dmmpmm(Noyes_hd)/fly

Match Rank:9
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AACACAGWAT
AAAAAACAAA----

Caup/dmmpmm(Noyes_hd)/fly

Match Rank:10
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AACACAGWAT
CAATAACAAA----