Information for 3-GGGGTGGGGG (Motif 5)


Reverse Opposite:

p-value:1e-7
log p-value:-1.801e+01
Information Content per bp:1.869
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif2.15%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets34.4 +/- 19.4bp
Average Position of motif in Background21.8 +/- 2.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SeqBias: polyC-repeat

Match Rank:1
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:GGGGTGGGGG
GGGGGGGGGG

KLF5/MA0599.1/Jaspar

Match Rank:2
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GGGGTGGGGG
GGGGNGGGGC

ALFIN1(HD-PHD)/Medicago sativa/AthaMap

Match Rank:3
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GGGGTGGGGG
GAGGTGGGGC

SP1/MA0079.3/Jaspar

Match Rank:4
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GGGGTGGGGG
GGGGGCGGGGC

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.76
Offset:1
Orientation:forward strand
Alignment:GGGGTGGGGG
-GGGGGGGG-

YPR022C/MA0436.1/Jaspar

Match Rank:6
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:GGGGTGGGGG
--NGTGGGG-

Klf4/MA0039.2/Jaspar

Match Rank:7
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GGGGTGGGGG
TGGGTGGGGC

MIG1/MA0337.1/Jaspar

Match Rank:8
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:GGGGTGGGGG
---GCGGGGN

ADR1/MA0268.1/Jaspar

Match Rank:9
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:GGGGTGGGGG
---GTGGGGT

PB0110.1_Bcl6b_2/Jaspar

Match Rank:10
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----GGGGTGGGGG-
NNTNAGGGGCGGNNNN